The batch file creation process begins by selecting a command from the list of available commands. At the time of writing the available commands are run, copy, rename, makedir, delete, deltree, end process, kill process and text to clipboard. Each command has to be associated with a filename or name and several optional components including parameters, execution delays, working directories, run modes or priorities.

Drag and drop is supported between Windows Explorer and Batchrun to select files more easily from the computer system. As soon as the first command has been added to the program it can be tested by executing it from within the interface. Batchrun will display a progress bar that gives the user a indication of the execution process. The batch files can be saved directly to the computer system and even the Windows startup process. They are however not saved as .bat files but as .brs files which can only be executed by the Batchrun software.